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LMD Systems Laser Microdissection Microscopes

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Laser Microdissection (LMD, also known as Laser Capture Microdissection or LCM) enables users to isolate specific single cells or entire areas of tissue. Leica LMD systems allow users to easily isolate Regions of Interest (ROI) from entire areas of tissue down to single cells or even subcellular structures such as chromosomes.

LMD is typically used in genomics (DNA), transcriptomics (mRNA, miRNA), proteomics, metabolomics, and even next generation sequencing (NGS). Researchers in neurology, cancer research, plant analysis, forensics or climate research rely on this method. LMD is a perfect tool for live cell culture (LCC), for cloning and re-cultivation, manipulation or downstream analysis.

LMD Software

The LMD software is an intutive application software designed to streamline the process of selecting settings so that you can focus on obtaining high-quality regions of your sample

Success is Objective

LMD objectives are designed for the task of enabling flexible laser settings for unique applications

Gravity for Cleanliness

Your downstream analysis relies on contaminate-free isolates. This is why Leica LMD systems collect dissectates via gravity

We Move the Laser, not the Sample

Only Leica Microsystems uses high-precision optics to steer the laser beam along the desired cut line on the tissue with prisms

PEN Petri Dishes 4 µm (1 pack=20 pc)

PEN Petri Dishes 4 µm (1 pack=20 pc)

Petri dishes with 4 µm thick PEN membrane bottom for cutting, pack of 20

pre-printed LMD Frame Slides

pre-printed LMD Frame Slides

Metal frame slides with a 4 µm thick PEN membrane with markings for automated shape imports, 10 packs of 5 slides, 50 slides total

EP-DIRECTOR LMD-Slides, 50 slides

EP-DIRECTOR LMD-Slides, 50 slides

Director slides for direct ablation of material with the LMD, pack of 50 slides

PET FrameSlide, steel frames, 50 slides

PET FrameSlide, steel frames, 50 slides

PET frame slide, a pack of 50 steel frames which can also be used as sample carriers. Leica Microsystems consumables are designed to deliver reliable performance across demanding research workflows. Leica LMD slides and immersion oils work together to support precision, reproducibility, and confidence in laser microdissection and high‑resolution imaging applications. Leica LMD slides are available in multiple membrane types and formats, allowing researchers to select the optimal slide for their sample, detection method, and experimental goal. This flexibility supports both routine workflows and advanced applications such as fluorescence, while demo slide kits make it easy to compare options and identify the best fit.

pE 300 lite SB direct fit

pE 300 lite SB direct fit

pE 300 lite SB direct fit

PEN WhiteCoat(2µm), glass, 200 pcs

PEN WhiteCoat(2µm), glass, 200 pcs

Glass slides with a 2 µm thick PEN membrane, slide has writable area on one end, pack of 200

pre-printed LMD Membrane Slides

pre-printed LMD Membrane Slides

Glass slides with a 4 µm thick PEN membrane with markings for automated shape imports, 10 packs of 5 slides, 50 slides total

µ-Slide w. membrane, 18well,ibidi,15 pcs

µ-Slide w. membrane, 18well,ibidi,15 pcs

18-well Ibidi u-slide with 2 µm PEN membrane bottom, pack of 15

PPS FrameSlide (4 µm), steel frames, 50

PPS FrameSlide (4 µm), steel frames, 50

Metal frame slides with a 4 µm thick PPS membrane, pack of 50

PET FrameSlide,steel frames, RNase-free

PET FrameSlide,steel frames, RNase-free

Metal frame slides with a 1.4 µm thick PET membrane for RNA work, RNase-free, pack of 50

Leica Laser Microdissection Software

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The Leica LMD software is an intutive application software designed to streamline the process of selecting settings so that you can focus on obtaining high-quality regions of your sample. Select, dissect, and visualize with ease!

  • Control laser and microscope
  • Guide the laser beam by mouse or pen screen
  • Create a Specimen Overview for better orientation
  • Detect and cut your samples automatically

The Leica LMD Software connectivity:

  • Use your self-made pattern recognition software
  • Import your ROIs from other devices e.g. slide scanners

Consumables

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A) Specimen

Leica Microsystems offers different slide options for laser microdissection.

  • Use any kind of membrane slides for genomics and transcriptomics
  • Use PET slides for certain applications in proteomics and metabolomics because PET is almost free of softeners.
  • Choose DIRECTOR slides to work completely membrane free

Read how to choose the adequate consumable for Laser Microdissection.

B) Collection

Since the Leica LMD systems collect dissectates simply by gravity, you can use standard devices for their collection. Just use common molecular biology reaction devices such as 0.2 or 0.5 ml tube caps – which you already have in your lab. Collection devices can be dry or filled with reaction buffer or culture media for the LMD 

application.

Automation Options

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The ADM (Auto Detection Mode) is a software module which helps collect large amounts of similar dissectates. You just have to encircle a region you are interested in and the software will use this as a template for other regions. For example, Proteomics analysis requires a large amount of sample to be captured, and ADM has provided a great benefit to labs working with 100's-1000's of dissectates.

Autofocus can be used before each dissection process to keep the focus of hundreds of ROIs distributed over the slide. Moreover, you can automatically inspect and document all collection devices which were used.

The systematic approach: A raster tool separates your Field of View into a given number of regions. With this function, you can systematically dissect your specimen and collect your dissectate into a variety of collection devices such as 96-Well plates.

High-Throughput Capability

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Need more throughput? The LMD systems can be configured with different kinds of stages. The LMT350 ultra scanning stage provides the fastest, most silent and most precise navigation among them.

The LMT350 is capable of holding collector vessels starting from 0.2 ml tube caps, through 8 and 12 cap-strips up to standard 96-well and 386-well plates*. This enables you to do high-throughput experiments.

Because you don’t need any special material but use regular microtiter plates, these plates can be loaded directly into standard PCR machines.

*max.352 wells addressable

LCC – Live Cell Cutting

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If you work with live cells, you are used to working with inverted microscopes. Live cell cutting works with our LMD systems, even though the Leica LMD systems are based on an upright microscope.

  • You can dissect living cells in culture in order to re-cultivate, clone, or analyze single cells, colonies, or cell clusters
  • You can attach a climate chamber to the LMD system
  • You can grow cells on petri dishes with PEN membrane or multi-well ibidi slides
  • You can collect the dissectate of living cell cultures into Petri dishes with or without PEN membrane, ibidi slides, or 8-stripe tubes for re-cultivation, or into collection devices such as PCR tube caps for analysis

Success is Objective

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LMD objectives are designed for the task of enabling flexible laser settings for unique applications. Leica's development and manufacturing of optics has been among of our core competencies from the start in the 19th century, so you can rely on the performance of our dedicated LMD objectives.

  • Choose from a range of dry objectives – from 2.5x to 150x
  • Use the 150x SmartCut objective to go into detail with high magnification when required
  • Get a large field of view to cut large parts of samples in one piece with low-magnification objectives
  • Benefit from objectives with the highest possible transmission of laser light at 350 nm to cut tissue, bones, teeth, brain, plants, chromosomes and living cells – try them for your application!

The outstanding imaging performance our objectives provide goes without saying.

Same Principle, Two Systems

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Choose your system: The difference between the Leica LMD6 and Leica LMD7 is the laser. The LMD7 provides higher laser power and more laser controls than the LMD6

This makes the Leica LMD6 the tool for standard applications dissecting soft tissues such as brain, liver, or kidney. And it makes the Leica LMD7 ideally suited to dissect any kind of tissue independent of its size or shape.

Two systems for your discoveries Leica LMD6 for standard tissue dissection Leica LMD7 for higher laser power and more flexibility

Interface for Artificial Intelligence

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Aivia is our AI-based, image visualization, analysis and interpretation platform. With the help of AI-enhanced tools such as the Pixel Classifier, Aivia can be used to automatically define Regions of interest (ROI) which are destined for Laser Microdissection (LMD). ROIs can be detected by Aivia and imported directly into the LMD software for Microdissection.

Besides Aivia other external software can be used for automatic ROI detection. The LMD software simply needs an XML file containing the ROI information.

  • Mund et al., Nature Biotechnology, 2022 https://doi.org/10.1038/s41587-022-01302-5
  • Mitchell et al., JoVE, 2022 https://doi.org/10.3791/64171

Combination System: LMD System with THUNDER Imaging

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The LMD6 and LMD7 systems can be combined with THUNDER. The base stand of the THUNDER Imager 3D Tissue and LMD systems are the same, thus such a combination offers:

  • Lab space savings with one system for different tasks
  • Laser Microdissection with the LMD without limitation
  • Brilliant THUNDER fluorescence imaging using LAS X, even in multi-color and 3D (z-stacks) and visualization in the 3D viewer.

We Move the Laser, not the Sample

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Try writing your name on a piece of paper by moving the paper instead of the pen. Hard to do? That’s why we move the laser, not the sample for laser microdissection.

Only Leica Microsystems uses high-precision optics to steer the laser beam along the desired cut line on the tissue with prisms. That means that the Leica LMD cuts perpendicularly to the tissue and leaves clean cuts of contamination-free isolates.

Precision. Always.

  • Cut with highest possible precision and speed
  • Cut directly, real-time with "Move and Cut"

Gravity for Cleanliness

Your downstream analysis relies on contaminate-free isolates. This is why Leica LMD systems collect dissectates via gravity. Their unique laser-guidance based dissection method preserves the integrity of your isolates – contact-free and contamination-free.

1, 2, 3 – contamination-free sample!

  1. You choose the area of interest
  2. You move the laser along the area to be cut out
  3. The dissectate drops into the Petri dish and is ready for further analysis

The real asset: Gravity always works.

Laser Adjustment for your Sample

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The LMD7's power, aperture, speed, head current, and pulse frequency settings are tunable to the needs of your sample. For example, thick plant sections require high power, while cutting around fragile neurons will require less power. Thin sections can typically use faster cuts than thick sections.

Advanced cutting modes add enhanced precision to how you will dissect your sample. For example you can draw first and cut afterwards (Draw + Cut), or cut in real-time by mouse click or with a PEN screen (Move + Cut). The Draw + Scan mode is made for ablation from glass, whereas the Laser Screw cuts thick specimen in consecutive rounds. The Final Pulse mode enables you to kick demanding dissectates into the collection vessel.

Which consumables can I use for LMD?
Generally, you can use the consumables which you already have in your lab. There is a variety of consumables which is presented in the Science Lab article Application-specific Consumables for Laser Microdissection.
How do I benefit from the collection by gravity?
You get the best samples possible, since collection via gravity is contact-free and therefore contamination-free as proven in many scientific publications. You also exclude cross-contamination as the sample is never in direct contact with the specimen or specimen carrier. And you can choose the collection device, as no special cost-intensive adhesive treatment is needed to capture dissectates against gravity. Through gravity, the dissected area simply drops directly into a standard tube cap or other collection vessel. No additional step is needed, you save time, and you can even dissect many samples for one experiment, either pooled into the same collection vessel or separated into different collection vessels.
How does the Leica Microsystems' LMD systems cut out my specimen?
We move the laser, not the sample. You can compare this to cutting something out from paper: You move the scissors (the laser) while the paper (the sample) remains fixed. Both Leica LMD systems offer a guided laser focus, which is achieved with a prism bridge, and collect the dissectate simply via gravity into a standard collection vessel below the sample. Simple, smart and effective! This method is explained on Science Lab in the tutorial "How to achieve fast precise cutting lines in laser microdissection"
What are the limitations of the Leica LMD7?
The only limit for the LMD7 are three-dimensional structures which cannot be dissected and collected cleanly with any laser capture device. Also non UV-absorbable samples and very thick, wet samples such as one-millimeter brain slices in media are too challenging for the system.
What are the advantages of the Leica LMD7?
You can perfectly dissect any kind of sample independent of its size or shape. And you are really fast with the Leica LMD7: The laser beam moves fast and becomes even more efficient with the pulse frequency adjustment. Collection of the dissectates via gravity is the icing on the cake – no further handling required, but off with the sample to further analysis. The LMD7 is the best choice for multi-user facilities as the laser can easily be adjusted to any kind of sample and application ranging from subcellular structures like chromosomes up to wood sections of several hundred micrometers thickness.
What are the limitations of the Leica LMD6?
The Leica LMD6 has lower laser power and less laser controls than the Leica LMD7. It is therefore less flexible than the Leica LMD7. Thick and hard tissues may pose problems to the systems – either they cannot be dissected quickly or maybe not at all. This very much depends on the thickness and kind of sample. If you have any questions on which systems to choose for your application, please do not hesitate to contact us.
What are the advantages of the Leica LMD6?
You can perfectly dissect soft tissues such as brain, liver, or kidney, independent of its size or shape with the Leica LMD6. The laser beam movement makes cutting fast and the collection of dissectates via gravity even increases the application speed since the sample is ready for further analysis directly after collection.
How does sample preparation differ to common microscopic sample preparation?
Special dyes and fixatives should be uses to protect the content for downstream molecular biology analysis such as PCR, qPCR, sequencing, NGS, MALDI-/SELDI-TOF, etc.. Special membrane-based consumables without coverslip lead to optimal results in most cases. Plain glass slide can be used as well.
What can I do with the Leica LMD systems?
You can dissect regions of interest from samples. Apart from laser microdissection, the Leica LMD6 is ideally suited to standard applications dissecting soft tissues such as brain, liver, and kidney, while the Leica LMD7 dissecting any kind of tissue independent of its size or shape. Additionally, the Leica LMD systems can be used for live cell culture (LCC), for example for cloning, and as a manipulation tool (e.g. for live cell or organism manipulation), NanoSIMS or CLEM preparation.
Which samples would I usually work on with LMD?
A wide variety of specimens can be worked on with the LMD in various preparations: fresh, frozen, fixed, or immuno-labeled samples, live cells, smear preparations, bone, plant, wood, dentin and many more.
In which fields of research is LMD commonly used?
LMD is used in a wide range of research fields. To name but a few: in neurology, cancer research, plant analysis, forensics, or climate research. More information on LMD on Science Lab
What do I need LMD for?
LMD is commonly used for Genomics (DNA), transcriptomics (RNA; e.g. mRNA, miRNA), proteomics, metabolomics, and next generation sequencing Isolation of single cells, cell cluster, or subcellular structures Absolute identification of mutations within cells of interest Gene expression profiling of a specific cell type within a tissue Identification of cell proteins during a specific physiological event Isolation and further cultivation of transgenic cells from a culture
What is laser microdissection (LMD)?
Laser microdissection (LMD) is a technique for isolating specific and pure targets from microscopic heterogeneous samples for downstream analysis of DNA, RNA, and proteins. More precisely, a laser cuts the specimen at a marked site and the cutout is then collected in a reaction tube.
LMD Software Laser Microdissection
Software

LMD Software Laser Microdissection

Advanced laser microdissection software for precise cell isolation from FFPE, frozen & live samples. Supports genomics, proteomics, spatial biology. Get quote.

THUNDER Imager Tissue
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THUNDER Imager Tissue

Explore the THUNDER Imager Tissue, which offers real-time 3D fluorescence imaging with computational clearing and is ideal for neuroscience, and histology.